Reporter groups on oligonucleotides


BODIPY® fluorophores

BODIPY® fluorophores span the complete visible spectrum and have spectral characteristics which are superior over commonly used dyes.
Advantages:
  • Higher quantum yields
  • Narrower emission bandwidths
  • Greater photostability
  • Insensitive to pH changes
  • Useful for DNA sequencing because the dye exhibits minimal effect on the mobility of the fragment during electrophoresis

Basic structure of the BODIPY fluorophore


BODIPY® FL

The green fluorescent BODIPY® FL fluorophore has several characteristics that make it potentially superior to fluorescein.
These include:
  • High extinction coefficient
  • High fluorescent quantum yield (often approaching 1.0, even in water)
  • Spectral properties that are insensitive to solvent polarity and pH
  • Narrow emission bandwidth, resulting in a higher peak intensity than fluorescein
  • Little or no spectral overlap with longer wavelength dyes such as tetramethyl-rhodamine and Texas Red, making it useful for multicolor applications
  • Greater photostability than fluorescein in some environments
  • Lack of ionic charge
The different BODIPY® dyes are named according to their absorption and emission wave length or according to the dye they can substitute. The following BODIPY® fluorophores are available:

BODIPY®
absorption
emission
e [cm-1M-1]
493/503
500 nm
509 nm
79000
530/550
534 nm
551 nm
77000
558/568
559 nm
568 nm
97000
564/570-X
563 nm
569 nm
142000
576/589
575 nm
588 nm
83000
581/591-X
582 nm
591 nm
154000
630/650
625 nm
640 nm
101000
650/665
646 nm
660 nm
102000
FL (substitute for Fluorescein)
502 nm
510 nm
82000
R6G (substitute for Carboxyrhodamine 6G)
528 nm
547 nm
70000
TMR-X (substitute for TAMRA)
544 nm
570 nm
56000
TR-X (substitute for Texas-Red)
588 nm
616 nm
68000
Sold under license from Molecular Probes, Inc.

All BODIPY® fluorophores are available in the following scales:



order online Order online

product
scale
amount
cat. no.
price/coupling
5'-BODIPY®
0.05 µmol
5 nmol
5-0310-122
78.50 EUR
0.20 µmol
25 nmol
5-0310-123
94.00 EUR
1.00 µmol
100 nmol
5-0310-124
165.00 EUR
3'-BODIPY®
0.05 µmol
5 nmol
5-0310-102
78.50 EUR
0.20 µmol
25 nmol
5-0310-103
94.00 EUR
1.00 µmol
100 nmol
5-0310-104
165.00 EUR
internal BODIPY®
0.05 µmol
5 nmol
5-0310-112
100.00 EUR
0.20 µmol
25 nmol
5-0310-113
115.00 EUR
1.00 µmol
100 nmol
5-0310-114
165.00 EUR

Order information
see also "how to order"


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